Reconstructing hidden permutations using the Average-Precision (AP) correlation statistic

Eli Upfal , Fabio Vandin , Alessandro Epasto , Lorenzo De Stefani
national conference on artificial intelligence 1526 -1532

1
2016
Reconstructing Cancer Pathways and Their Mutation Order from Cross-Sectional Data

Fabio Vandin , Benjamin J. Raphael
intelligent systems in molecular biology

2014
Enriched power of case-only design in detecting gene-gene interaction using disease concordant twins

Fabio Vandin , Jan Baumbach , Qihua Tan , Weilong Li
13th Annual Meeting of the International Symposium on Integrative Bioinformatics

2017
Differentially Mutated Subnetworks Discovery

Eli Upfal , Fabio Vandin , Morteza Chalabi Hajkarim
workshop on algorithms in bioinformatics 113 14

2018
8
2020
2021
2021
Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data

Benjamin J. Raphael , Fabio Vandin
research in computational molecular biology 8394 250 -264

9
2014
SPuManTE: Significant Pattern Mining with Unconditional Testing

Leonardo Pellegrina , Matteo Riondato , Fabio Vandin
knowledge discovery and data mining 1528 -1538

9
2019
Hypothesis Testing and Statistically-sound Pattern Mining

Leonardo Pellegrina , Matteo Riondato , Fabio Vandin
knowledge discovery and data mining 3215 -3216

2
2019
15
2017
MiSoSouP: Mining Interesting Subgroups with Sampling and Pseudodimension

Matteo Riondato , Fabio Vandin
ACM Transactions on Knowledge Discovery From Data 14 ( 5) 1 -31

10
2020
Mutational landscape and significance across 12 major cancer types

Cyriac Kandoth , Michael D McLellan , Fabio Vandin , Kai Ye
Nature 502 ( 7471) 333 -339

4,172
2013
The mutational landscape of lethal castration-resistant prostate cancer

Catherine S. Grasso , Yi-Mi Wu , Dan R. Robinson , Xuhong Cao
Nature 487 ( 7406) 239 -243

2,443
2012
Quantitative behavior of protein complexes in human cells

Morteza H Chalabi , Vasileios Tsiamis , Lukas Käll , Fabio Vandin
bioRxiv 367227

2018
Erratum to: CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer.

Mark D. M. Leiserson , Hsin-Ta Wu , Fabio Vandin , Benjamin J. Raphael
Genome Biology 17 ( 1) 168 -168

2016
HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology.

Raunak Shrestha , Ermin Hodzic , Thomas Sauerwald , Phuong Dao
Genome Research 27 ( 9) 1573 -1588

35
2017
Workshop: Algorithms for discovery of mutated pathways in cancer

Fabio Vandin , Eli Upfal , Benjamin J. Raphael
international conference on computational advances in bio and medical sciences 1 -1

2012
Identifying significant mutations in large cohorts of cancer genomes

Fabio Vandin , Eli Upfal , Ben Raphael
international conference on computational advances in bio and medical sciences 1 -1

2013