Damage of low-energy ion irradiation on copper nanowire: molecular dynamics simulation
Zou Xue-Qing , Xue Jian-Ming , Wang Yu-Gang
Chinese Physics B 19 ( 3) 036102
12
2010
Molecular dynamics simulations on the ionic current through charged nanopores
J M Xue , X Q Zou , Y B Xie , Y G Wang
Journal of Physics D 42 ( 10) 105308
20
2009
Whole-Genome Sequencing of Retinoblastoma Reveals the Diversity of Rearrangements Disrupting RB1 and Uncovers a Treatment-Related Mutational Signature.
Serena Nik-Zainal , Irene Scheimberg , Mandeep S Sagoo , Mandeep S Sagoo
Cancers 13 ( 4) 754
14
2021
A systematic CRISPR screen defines mutational mechanisms underpinning signatures caused by replication errors and endogenous DNA damage
Xueqing Zou , Gene Ching Chiek Koh , Arjun Scott Nanda , Andrea Degasperi
Nature Cancer 2 1 -15
1
2021
Cytosine methylation alters DNA mechanical properties
Philip M. D. Severin , Xueqing Zou , Hermann E. Gaub , Klaus Schulten
Nucleic Acids Research 39 ( 20) 8740 -8751
103
2011
Flow-Induced β-Hairpin Folding of the Glycoprotein Ibα β-Switch
Xueqing Zou , Yanxin Liu , Zhongzhou Chen , Gloria Ines Cárdenas-Jirón
Biophysical Journal 99 ( 4) 1182 -1191
13
2010
A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies.
Andrea Degasperi , Tauanne Dias Amarante , Jan Czarnecki , Scott Shooter
Nature Cancer 1 ( 2) 249 -263
34
2020
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
Helen Davies , Dominik Glodzik , Sandro Morganella , Lucy R Yates
Nature Medicine 23 ( 4) 517 -525
347
2017
Validating the concept of mutational signatures with isogenic cell models.
Xueqing Zou , Michel Owusu , Rebecca Harris , Stephen P. Jackson
Nature Communications 9 ( 1) 1744 -1744
72
2018
Epigenetic dysregulation underpins tumorigenesis in a cutaneous tumor syndrome.
Helen R. Davies , Kirsty Hodgson , Edward Schwalbe , Jonathan Coxhead
bioRxiv 687459
1
2019
Mechanism of Interaction Between Lung Surfactant Protein-D and Influenza A Virus Hemagglutinin
Boon Chong Goh , Xueqing Zou , Michael J. Rynkiewicz , Barbara A. Seaton
Biophysical Journal 102 ( 3) 63a
2012
Effects of cytosine hydroxymethylation on DNA strand separation
Philip M.D. Severin , Xueqing Zou , Klaus Schulten , Hermann E. Gaub
Biophysical Journal 104 ( 1) 208 -215
23
2013
Mutational signatures: experimental design and analytical framework
Gene Koh , Xueqing Zou , Serena Nik-Zainal ,
Genome Biology 21 ( 1) 1 -13
8
2020
DNA target sequence identification mechanism for dimer-active protein complexes
Markita P. Landry , Xueqing Zou , Lei Wang , Wai Mun Huang
Nucleic Acids Research 41 ( 4) 2416 -2427
7
2013
A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D.
Martin van Eijk , Michael J. Rynkiewicz , Mitchell R. White , Kevan L. Hartshorn
Journal of Biological Chemistry 287 ( 32) 26666 -26677
20
2012
Whole-Genome Sequencing Reveals Breast Cancers with Mismatch Repair Deficiency.
Helen Davies , Sandro Morganella , Colin A. Purdie , Se Jin Jang
Cancer Research 77 ( 18) 4755 -4762
45
2017
A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers
Dominik Glodzik , Sandro Morganella , Helen Davies , Peter T Simpson
Nature Genetics 49 ( 3) 341 -348
50
2017
Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation
Arie B. Brinkman , Serena Nik-Zainal , Femke Simmer , F. Germán Rodríguez-González
Nature Communications 10 ( 1) 1749 -1749
15
2019
Short inverted repeats contribute to localized mutability in human somatic cells.
Xueqing Zou , Sandro Morganella , Dominik Glodzik , Helen Davies
Nucleic Acids Research 45 ( 19) 11213 -11221
7
2017
Epigenetic modifiers DNMT3A and BCOR are recurrently mutated in CYLD cutaneous syndrome.
Helen R. Davies , Kirsty Hodgson , Edward Schwalbe , Jonathan Coxhead
Nature Communications 10 ( 1) 4717 -4717
9
2019