作者: Flaviu Cipcigan , Anna Paola Carrieri , Edward O. Pyzer-Knapp , Ritesh Krishna , Ya-Wen Hsiao
DOI: 10.1063/1.5027261
关键词: Exploit 、 Molecular biophysics 、 Representation (systemics) 、 Physics 、 Context (language use) 、 Antimicrobial peptides 、 Rational design 、 Visualization 、 Drug discovery 、 Computational biology
摘要: Simulation and data analysis have evolved into powerful methods for discovering understanding molecular modes of action designing new compounds to exploit these modes. The combination provides a strong impetus create tools techniques at the interfaces between physics, biology, science as pathway scientific insight accelerated discovery. In this context, we explore rational design novel antimicrobial peptides (short protein sequences exhibiting broad activity against multiple species bacteria). We show how datasets can be harvested reveal features which inform concepts. introduce visualization tools: graphical representation k-mer spectrum fundamental property encoded in peptide databases data-driven illustrate membrane binding permeation helical peptides.