First clinical isolate of Escherichia coli harboring mcr-1 gene in Mexico.

作者: Jocelin Merida-Vieyra , Agustín De Colsa- Ranero , Patricia Arzate-Barbosa , Eduardo Arias- de la Garza , Alfonso Méndez-Tenorio

DOI: 10.1371/JOURNAL.PONE.0214648

关键词: Enteroaggregative Escherichia coliAmikacinMinimum inhibitory concentrationColistinMCR-1VirulencePlasmidEscherichia coliBiologyMicrobiology

摘要: Our aim in this report was to describe the characteristics of first clinical isolate Escherichia coli (EC-PAG-733) harboring mcr-1 gene found Mexico. This obtained from a fecal sample young child with an oncological condition. We whole-genome sequence using next-generation sequencing and analyzed by bioinformatics tools. EC-PAG-733 resistant third- fourth-generation cephalosporins susceptible all carbapenems amikacin; it also ciprofloxacin, levofloxacin, gentamicin colistin at minimum inhibitory concentration (MIC) 4 μg/mL. classified as O11:H25-ST457. harbored ESBL type CTX-M-55 well several virulence factors that have been associated Enteroaggregative (EAEC). The located within IncI2 plasmid. results whole genome shotgun project were deposited DDBJ/ENA/GenBank under accession number QKXE00000000.

参考文章(58)
Brittany N. Ross, Maricarmen Rojas-Lopez, Roberto J. Cieza, Brian D. McWilliams, Alfredo G. Torres, The Role of Long Polar Fimbriae in Escherichia coli O104:H4 Adhesion and Colonization PLOS ONE. ,vol. 10, pp. e0141845- ,(2015) , 10.1371/JOURNAL.PONE.0141845
Katrine G. Joensen, Anna M. M. Tetzschner, Atsushi Iguchi, Frank M. Aarestrup, Flemming Scheutz, Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data Journal of Clinical Microbiology. ,vol. 53, pp. 2410- 2426 ,(2015) , 10.1128/JCM.00008-15
Hélène Barreteau, Meriem El Ghachi, Aurélie Barnéoud-Arnoulet, Emmanuelle Sacco, Thierry Touzé, Denis Duché, Fabien Gérard, Mark Brooks, Delphine Patin, Ahmed Bouhss, Didier Blanot, Herman van Tilbeurgh, Michel Arthur, Roland Lloubès, Dominique Mengin-Lecreulx, Characterization of colicin M and its orthologs targeting bacterial cell wall peptidoglycan biosynthesis. Microbial Drug Resistance. ,vol. 18, pp. 222- 229 ,(2012) , 10.1089/MDR.2011.0230
Aaron CE Darling, Bob Mau, Frederick R Blattner, Nicole T Perna, Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Research. ,vol. 14, pp. 1394- 1403 ,(2004) , 10.1101/GR.2289704
Salvatore Cosentino, Mette Voldby Larsen, Frank Møller Aarestrup, Ole Lund, PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data PLoS ONE. ,vol. 8, pp. e77302- 11 ,(2013) , 10.1371/JOURNAL.PONE.0077302
Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller, A greedy algorithm for aligning DNA sequences. Journal of Computational Biology. ,vol. 7, pp. 203- 214 ,(2000) , 10.1089/10665270050081478
Magdalena T. Nüesch-Inderbinen, Eveline Hofer, Herbert Hächler, Lothar Beutin, Roger Stephan, Characteristics of enteroaggregative Escherichia coli isolated from healthy carriers and from patients with diarrhoea. Journal of Medical Microbiology. ,vol. 62, pp. 1828- 1834 ,(2013) , 10.1099/JMM.0.065177-0
Renato Pariz Maluta, Catherine Mary Logue, Monique Ribeiro Tiba Casas, Ting Meng, Elisabete Aparecida Lopes Guastalli, Thaís Cabrera Galvão Rojas, Augusto Cezar Montelli, Teruê Sadatsune, Marcelo de Carvalho Ramos, Lisa Kay Nolan, Wanderley Dias da Silveira, Overlapped sequence types (STs) and serogroups of avian pathogenic (APEC) and human extra-intestinal pathogenic (ExPEC) Escherichia coli isolated in Brazil. PLOS ONE. ,vol. 9, pp. 11- ,(2014) , 10.1371/JOURNAL.PONE.0105016
Olivier Clermont, Julia K. Christenson, Erick Denamur, David M. Gordon, The Clermont Escherichia coli phylo‐typing method revisited: improvement of specificity and detection of new phylo‐groups Environmental Microbiology Reports. ,vol. 5, pp. 58- 65 ,(2013) , 10.1111/1758-2229.12019
Pina M. Fratamico, Lori K. Bagi, Eric J. Bush, Barbara T. Solow, Prevalence and characterization of shiga toxin-producing Escherichia coli in swine feces recovered in the National Animal Health Monitoring System's Swine 2000 study. Applied and Environmental Microbiology. ,vol. 70, pp. 7173- 7178 ,(2004) , 10.1128/AEM.70.12.7173-7178.2004