Emerging themes in radical SAM chemistry.

作者: Krista A Shisler , Joan B Broderick

DOI: 10.1016/J.SBI.2012.10.005

关键词: CysteineTriosephosphate isomeraseBiocatalysisCluster (physics)SUPERFAMILYTIM barrelChemistryStereochemistryRadical SAMOrganic chemistryRadical

摘要: Enzymes in the radical SAM (RS) superfamily catalyze a wide variety of reactions through unique chemistry. The characteristic markers include [4Fe–4S] cluster coordinated to protein via cysteine triad motif, typically CX3CX2C, with fourth iron by S-adenosylmethionine (SAM). serves as precursor for 5′-deoxyadenosyl radical, central intermediate nearly all RS enzymes studied date. SAM-bound is located within partial or full triosephosphate isomerase (TIM) barrel where chemistry occurs protected from surroundings. In addition TIM and cluster, many members contain additional domains and/or Fe–S clusters. Recently characterized are providing new examples remarkable range that can be catalyzed, well structural mechanistic insights into these fascinating reactions.

参考文章(76)
Eric M. Shepard, Joan B. Broderick, S-Adenosylmethionine and Iron–Sulfur Clusters in Biological Radical Reactions: The Radical SAM Superfamily Comprehensive Natural Products II. ,vol. 8, pp. 625- 661 ,(2010) , 10.1016/B978-008045382-8.00176-3
Alhosna Benjdia, Sowmya Subramanian, Jérôme Leprince, Hubert Vaudry, Michael K. Johnson, Olivier Berteau, Anaerobic sulfatase-maturating enzyme--a mechanistic link with glycyl radical-activating enzymes? FEBS Journal. ,vol. 277, pp. 1906- 1920 ,(2010) , 10.1111/J.1742-4658.2010.07613.X
Wolfgang Kabsch, Joachim Knappe, Andreas Becker, Karin Fritz-Wolf, Sabine Schultz, A. F. Volker Wagner, Structure and mechanism of the glycyl radical enzyme pyruvate formate-lyase Nature Structural & Molecular Biology. ,vol. 6, pp. 969- 975 ,(1999) , 10.1038/13341
Jon K. Rubach, Xavier Brazzolotto, Jacques Gaillard, Marc Fontecave, Biochemical characterization of the HydE and HydG iron-only hydrogenase maturation enzymes from Thermatoga maritima FEBS Letters. ,vol. 579, pp. 5055- 5060 ,(2005) , 10.1016/J.FEBSLET.2005.07.092
Kevin D. Swanson, Benjamin R. Duffus, Trevor E. Beard, John W. Peters, Joan B. Broderick, Cyanide and Carbon Monoxide Ligand Formation in Hydrogenase Biosynthesis European Journal of Inorganic Chemistry. ,vol. 2011, pp. 935- 947 ,(2011) , 10.1002/EJIC.201001056
Wei Huang, Hui Xu, Yan Li, Feng Zhang, Xin-Ya Chen, Qing-Li He, Yasuhiro Igarashi, Gong-Li Tang, Characterization of yatakemycin gene cluster revealing a radical S-adenosylmethionine dependent methyltransferase and highlighting spirocyclopropane biosynthesis. Journal of the American Chemical Society. ,vol. 134, pp. 8831- 8840 ,(2012) , 10.1021/JA211098R
Kaitlin S. Duschene, Joan B. Broderick, Viperin: a radical response to viral infection Biomolecular Concepts. ,vol. 3, pp. 255- 266 ,(2012) , 10.1515/BMC-2011-0057
Tyler L. Grove, Matthew I. Radle, Carsten Krebs, Squire J. Booker, Cfr and RlmN Contain a Single [4Fe-4S] Cluster, which Directs Two Distinct Reactivities for S-Adenosylmethionine: Methyl Transfer by SN2 Displacement and Radical Generation Journal of the American Chemical Society. ,vol. 133, pp. 19586- 19589 ,(2011) , 10.1021/JA207327V
Simon Arragain, Samuel K. Handelman, Farhad Forouhar, Fan-Yan Wei, Kazuhito Tomizawa, John F. Hunt, Thierry Douki, Marc Fontecave, Etienne Mulliez, Mohamed Atta, Identification of Eukaryotic and Prokaryotic Methylthiotransferase for Biosynthesis of 2-Methylthio-N6-threonylcarbamoyladenosine in tRNA Journal of Biological Chemistry. ,vol. 285, pp. 28425- 28433 ,(2010) , 10.1074/JBC.M110.106831
Fan-Yan Wei, Takeo Suzuki, Sayaka Watanabe, Satoshi Kimura, Taku Kaitsuka, Atsushi Fujimura, Hideki Matsui, Mohamed Atta, Hiroyuki Michiue, Marc Fontecave, Kazuya Yamagata, Tsutomu Suzuki, Kazuhito Tomizawa, Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice Journal of Clinical Investigation. ,vol. 121, pp. 3598- 3608 ,(2011) , 10.1172/JCI58056