Accurate and fast mapping of reads to genome

作者: Sim-Jasmine Truong , Xiaoju (Max) Ma , Wei-Min Liu , Xiaoying Chen , Yan Li

DOI:

关键词: Computational biologyHybrid genome assemblyGeneticsBiologyMutation (genetic algorithm)GenomeDeep sequencingFast mapping

摘要: Accurate and fast mapping of sequencing reads obtained from a targeted procedure can be provided. Once target region is selected, alternate regions the genome that are sufficiently similar to identified. If read more than an region, then determined as aligning region. The analyzed determine whether mutation exists in Accordingly, compared corresponding regions, not entire genome, thereby providing computational efficiency.

参考文章(11)
Alexander Pertsemlidis, Monica Horvath, Harold Garner, John Fondon, Prediction of disease-causing alleles from sequence context ,(2001)
Ghazala Hashmi, Michael Seul, Hybridization-Mediated Analysis Of Polymorphisms ,(2004)
Todd J. Treangen, Steven L. Salzberg, Repetitive DNA and next-generation sequencing: computational challenges and solutions Nature Reviews Genetics. ,vol. 13, pp. 36- 46 ,(2012) , 10.1038/NRG3117
Tao Jiang, Lei Yang, Hui Jiang, Geng Tian, XiuQing Zhang, High-performance single-chip exon capture allows accurate whole exome sequencing using the Illumina Genome Analyzer Science China Life Sciences. ,vol. 54, pp. 945- 952 ,(2011) , 10.1007/S11427-011-4232-4
Aparna Bhaduri, Kun Qu, Carolyn S. Lee, Alexander Ungewickell, Paul A. Khavari, Rapid identification of non-human sequences in high-throughput sequencing datasets Bioinformatics. ,vol. 28, pp. 1174- 1175 ,(2012) , 10.1093/BIOINFORMATICS/BTS100
Kunihiko Inoue, 邦彦 井上, Nonaqueous electrolyte secondary battery ,(2008)