Toward effective sharing of high-dimensional immunology data.

作者: Berend Snijder , Richard Kumaran Kandasamy , Giulio Superti-Furga

DOI: 10.1038/NBT.2974

关键词:

摘要: Immunology is on the cusp of a 'big data'–driven breakthrough, but strategies for standardizing and sharing high-dimensional data from independent laboratories are needed to ensure that support formation new robust hypotheses.

参考文章(30)
Alvis Brazma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul Spellman, Chris Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C.P. Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan Robinson, Ugis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald Taylor, Jaak Vilo, Martin Vingron, Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics. ,vol. 29, pp. 365- 371 ,(2001) , 10.1038/NG1201-365
Heather Piwowar, Altmetrics: Value all research products Nature. ,vol. 493, pp. 159- 159 ,(2013) , 10.1038/493159A
Daniel J Woodsworth, Mauro Castellarin, Robert A Holt, Sequence analysis of T-cell repertoires in health and disease Genome Medicine. ,vol. 5, pp. 98- 98 ,(2013) , 10.1186/GM502
Holden T. Maecker, J. Philip McCoy, Robert Nussenblatt, Standardizing immunophenotyping for the Human Immunology Project Nature Reviews Immunology. ,vol. 12, pp. 191- 200 ,(2012) , 10.1038/NRI3158
Gabriela Bindea, Bernhard Mlecnik, Marie Tosolini, Amos Kirilovsky, Maximilian Waldner, Anna C. Obenauf, Helen Angell, Tessa Fredriksen, Lucie Lafontaine, Anne Berger, Patrick Bruneval, Wolf Herman Fridman, Christoph Becker, Franck Pagès, Michael R. Speicher, Zlatko Trajanoski, Jérôme Galon, Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer. Immunity. ,vol. 39, pp. 782- 795 ,(2013) , 10.1016/J.IMMUNI.2013.10.003
Shuzhao Li, Nadine Rouphael, Sai Duraisingham, Sandra Romero-Steiner, Scott Presnell, Carl Davis, Daniel S Schmidt, Scott E Johnson, Andrea Milton, Gowrisankar Rajam, Sudhir Kasturi, George M Carlone, Charlie Quinn, Damien Chaussabel, A Karolina Palucka, Mark J Mulligan, Rafi Ahmed, David S Stephens, Helder I Nakaya, Bali Pulendran, None, Molecular signatures of antibody responses derived from a systems biology study of five human vaccines Nature Immunology. ,vol. 15, pp. 195- 204 ,(2014) , 10.1038/NI.2789
Gisela Pachón, Isabel Caragol, Jordi Petriz, Subjectivity and flow cytometric variability Nature Reviews Immunology. ,vol. 12, pp. 396- 396 ,(2012) , 10.1038/NRI3158-C1
Berend Snijder, Prisca Liberali, Mathieu Frechin, Thomas Stoeger, Lucas Pelkmans, Predicting functional gene interactions with the hierarchical interaction score Nature Methods. ,vol. 10, pp. 1089- 1092 ,(2013) , 10.1038/NMETH.2655
El-ad David Amir, Kara L Davis, Michelle D Tadmor, Erin F Simonds, Jacob H Levine, Sean C Bendall, Daniel K Shenfeld, Smita Krishnaswamy, Garry P Nolan, Dana Pe'er, viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia Nature Biotechnology. ,vol. 31, pp. 545- 552 ,(2013) , 10.1038/NBT.2594
George Georgiou, Gregory C Ippolito, John Beausang, Christian E Busse, Hedda Wardemann, Stephen R Quake, The promise and challenge of high-throughput sequencing of the antibody repertoire. Nature Biotechnology. ,vol. 32, pp. 158- 168 ,(2014) , 10.1038/NBT.2782