Draft Whole-Genome Sequence of the Biocontrol Agent Trichoderma harzianum T6776.

作者: Riccardo Baroncelli , Giulia Piaggeschi , Lisa Fiorini , Edoardo Bertolini , Antonio Zapparata

DOI: 10.1128/GENOMEA.00647-15

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摘要: … in terms of growth promotion and biocontrol activity against fungal plant … biological control agents: status and prospects, p 9–22. In Butt TM, Jackson C, Magan N (ed), Fungi as biocontrol …

参考文章(20)
Ralph A Dean, Nicholas J Talbot, Daniel J Ebbole, Mark L Farman, Thomas K Mitchell, Marc J Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Yee Oh, Nicole Donofrio, Jun Seop Jeong, Darren M Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E Galagan, Bruce W Birren, None, The genome sequence of the rice blast fungus Magnaporthe grisea Nature. ,vol. 434, pp. 980- 986 ,(2005) , 10.1038/NATURE03449
Michael R Thon, Stéphane Hacquard, Stefan G Amyotte, Jochen Kleemann, Maria F Torres, Ulrike Damm, Ester A Buiate, Lynn Epstein, Noam Alkan, Janine Altmüller, Lucia Alvarado-Balderrama, Christopher A Bauser, Christian Becker, Bruce W Birren, Zehua Chen, Jaeyoung Choi, Jo Anne Crouch, Jonathan P Duvick, Mark A Farman, Pamela Gan, David Heiman, Bernard Henrissat, Richard J Howard, Mehdi Kabbage, Christian Koch, Barbara Kracher, Yasuyuki Kubo, Audrey D Law, Marc-Henri Lebrun, Yong-Hwan Lee, Itay Miyara, Neil Moore, Ulla Neumann, Karl Nordström, Daniel G Panaccione, Ralph Panstruga, Michael Place, Robert H Proctor, Dov Prusky, Gabriel Rech, Richard Reinhardt, Jeffrey A Rollins, Steve Rounsley, Christopher L Schardl, David C Schwartz, Narmada Shenoy, Ken Shirasu, Usha R Sikhakolli, Kurt Stüber, Serenella A Sukno, James A Sweigard, Yoshitaka Takano, Hiroyuki Takahara, Frances Trail, H Charlotte van der Does, Lars M Voll, Isa Will, Sarah Young, Qiandong Zeng, Jingze Zhang, Shiguo Zhou, Martin B Dickman, Paul Schulze-Lefert, Emiel Ver Loren van Themaat, Li-Jun Ma, Lisa J Vaillancourt, Richard J O'Connell, Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses Nature Genetics. ,vol. 44, pp. 1060- 1065 ,(2012) , 10.1038/NG.2372
S. Perotto, P. Angelini, V. Bianciotto, P. Bonfante, M. Girlanda, T. Kull, A. Mello, L. Pecoraro, C. Perini, A. M. Persiani, A. Saitta, S. Sarrocco, G. Vannacci, R. Venanzoni, G. Venturella, M. A. Selosse, Interactions of fungi with other organisms Plant Biosystems. ,vol. 147, pp. 208- 218 ,(2013) , 10.1080/11263504.2012.753136
Christian P Kubicek, Alfredo Herrera-Estrella, Verena Seidl-Seiboth, Diego A Martinez, Irina S Druzhinina, Michael Thon, Susanne Zeilinger, Sergio Casas-Flores, Benjamin A Horwitz, Prasun K Mukherjee, Mala Mukherjee, László Kredics, Luis D Alcaraz, Andrea Aerts, Zsuzsanna Antal, Lea Atanasova, Mayte G Cervantes-Badillo, Jean Challacombe, Olga Chertkov, Kevin McCluskey, Fanny Coulpier, Nandan Deshpande, Hans von Döhren, Daniel J Ebbole, Edgardo U Esquivel-Naranjo, Erzsébet Fekete, Michel Flipphi, Fabian Glaser, Elida Y Gómez-Rodríguez, Sabine Gruber, Cliff Han, Bernard Henrissat, Rosa Hermosa, Miguel Hernández-Oñate, Levente Karaffa, Idit Kosti, Stéphane Le Crom, Erika Lindquist, Susan Lucas, Mette Lübeck, Peter S Lübeck, Antoine Margeot, Benjamin Metz, Monica Misra, Helena Nevalainen, Markus Omann, Nicolle Packer, Giancarlo Perrone, Edith E Uresti-Rivera, Asaf Salamov, Monika Schmoll, Bernhard Seiboth, Harris Shapiro, Serenella Sukno, Juan Antonio Tamayo-Ramos, Doris Tisch, Aric Wiest, Heather H Wilkinson, Michael Zhang, Pedro M Coutinho, Charles M Kenerley, Enrique Monte, Scott E Baker, Igor V Grigoriev, Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma Genome Biology. ,vol. 12, pp. 1- 15 ,(2011) , 10.1186/GB-2011-12-4-R40
G. Parra, K. Bradnam, I. Korf, CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics. ,vol. 23, pp. 1061- 1067 ,(2007) , 10.1093/BIOINFORMATICS/BTM071
Magnus Karlsson, Mikael Brandström Durling, Jaeyoung Choi, Chatchai Kosawang, Gerald Lackner, Georgios D Tzelepis, Kristiina Nygren, Mukesh K Dubey, Nathalie Kamou, Anthony Levasseur, Antonio Zapparata, Jinhui Wang, Daniel Buchvaldt Amby, Birgit Jensen, Sabrina Sarrocco, Emmanuel Panteris, Anastasia L Lagopodi, Stefanie Pöggeler, Giovanni Vannacci, David B Collinge, Dirk Hoffmeister, Bernard Henrissat, Yong-Hwan Lee, Dan Funck Jensen, None, Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea Genome Biology and Evolution. ,vol. 7, pp. 465- 480 ,(2015) , 10.1093/GBE/EVU292
R. Baroncelli, J. M. Sanz-Martin, G. E. Rech, S. A. Sukno, M. R. Thon, Draft Genome Sequence of Colletotrichum sublineola, a Destructive Pathogen of Cultivated Sorghum. Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00540-14
P. Horton, K.-J. Park, T. Obayashi, N. Fujita, H. Harada, C.J. Adams-Collier, K. Nakai, WoLF PSORT: protein localization predictor. Nucleic Acids Research. ,vol. 35, pp. 585- 587 ,(2007) , 10.1093/NAR/GKM259
D. R. Zerbino, E. Birney, Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Genome Research. ,vol. 18, pp. 821- 829 ,(2008) , 10.1101/GR.074492.107
Pietro D. Spanu, James C. Abbott, Joelle Amselem, Timothy A. Burgis, Darren M. Soanes, Kurt Stüber, Emiel Ver Loren van Themaat, James K. M. Brown, Sarah A. Butcher, Sarah J. Gurr, Marc-Henri Lebrun, Christopher J. Ridout, Paul Schulze-Lefert, Nicholas J. Talbot, Nahal Ahmadinejad, Christian Ametz, Geraint R. Barton, Mariam Benjdia, Przemyslaw Bidzinski, Laurence V. Bindschedler, Maike Both, Marin T. Brewer, Lance Cadle-Davidson, Molly M. Cadle-Davidson, Jerome Collemare, Rainer Cramer, Omer Frenkel, Dale Godfrey, James Harriman, Claire Hoede, Brian C. King, Sven Klages, Jochen Kleemann, Daniela Knoll, Prasanna S. Koti, Jonathan Kreplak, Francisco J. López-Ruiz, Xunli Lu, Takaki Maekawa, Siraprapa Mahanil, Cristina Micali, Michael G. Milgroom, Giovanni Montana, Sandra Noir, Richard J. O’Connell, Simone Oberhaensli, Francis Parlange, Carsten Pedersen, Hadi Quesneville, Richard Reinhardt, Matthias Rott, Soledad Sacristán, Sarah M. Schmidt, Moritz Schön, Pari Skamnioti, Hans Sommer, Amber Stephens, Hiroyuki Takahara, Hans Thordal-Christensen, Marielle Vigouroux, Ralf Weßling, Thomas Wicker, Ralph Panstruga, Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism Science. ,vol. 330, pp. 1543- 1546 ,(2010) , 10.1126/SCIENCE.1194573