Phylogenetic Signal Dissection Identifies the Root of Starfishes

作者: Roberto Feuda , Andrew B. Smith

DOI: 10.1371/JOURNAL.PONE.0123331

关键词:

摘要: Relationships within the class Asteroidea have remained controversial for almost 100 years and, despite many attempts to resolve this problem using molecular data, no consensus has yet emerged. Using two nuclear genes and a taxon sampling covering major asteroid clades we show that non-phylogenetic signal created by three factors - Long Branch Attraction, compositional heterogeneity use of poorly fitting models evolution – confounded accurate estimation phylogenetic relationships. To overcome effect analyse data non-homogeneous models, site stripping creation subpartitions aimed reduce or amplify systematic error, calculate Bayes Factor support selection previously suggested topological arrangements orders. We most previous alternative hypotheses are not supported in reliable partitions, including placement either Forcipulatida Paxillosida as sister group other branches. The best-supported solution places Velatida asteroids, implications finding morphological asteroids presented.

参考文章(45)
Andy Gale, Phylogeny of the Neoasteroidea (post-Palaeozoic Asteroidea, Echinodermata) Special Papers in Palaeontology. ,vol. 85, ,(2011)
CHRISTOPHER MAH, DAVID FOLTZ, Molecular phylogeny of the Valvatacea (Asteroidea: Echinodermata) Zoological Journal of the Linnean Society. ,vol. 161, pp. 769- 788 ,(2011) , 10.1111/J.1096-3642.2010.00659.X
Erik A. Sperling, Davide Pisani, Kevin J. Peterson, Molecular paleobiological insights into the origin of the Brachiopoda Evolution & Development. ,vol. 13, pp. 290- 303 ,(2011) , 10.1111/J.1525-142X.2011.00480.X
CHRISTOPHER MAH, DAVID FOLTZ, Molecular phylogeny of the Forcipulatacea (Asteroidea: Echinodermata): systematics and biogeography Zoological Journal of the Linnean Society. ,vol. 162, pp. 646- 660 ,(2011) , 10.1111/J.1096-3642.2010.00688.X
L. R. McEdward, D. A. Janies, Life Cycle Evolution in Asteroids: What is a Larva? The Biological Bulletin. ,vol. 184, pp. 255- 268 ,(1993) , 10.2307/1542444
Andrew B. Smith, Mike Reich, Tracing the evolution of the holothurian body plan through stem‐group fossils Biological Journal of The Linnean Society. ,vol. 109, pp. 670- 681 ,(2013) , 10.1111/BIJ.12073
J. Felsenstein, Cases in which Parsimony or Compatibility Methods will be Positively Misleading Systematic Biology. ,vol. 27, pp. 401- 410 ,(1978) , 10.1093/SYSBIO/27.4.401
Peter G. Foster, Donal A. Hickey, Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. Journal of Molecular Evolution. ,vol. 48, pp. 284- 290 ,(1999) , 10.1007/PL00006471
Mioko Matsubara, Miéko Komatsu, Takeyoshi Araki, Shuichi Asakawa, Shin-ichi Yokobori, Kimitsuna Watanabe, Hiroshi Wada, The phylogenetic status of Paxillosida (Asteroidea) based on complete mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. ,vol. 36, pp. 598- 605 ,(2005) , 10.1016/J.YMPEV.2005.03.018
E. W. MACBRIDE, Echinoderm Larvæ and their Bearing on Classification Nature. ,vol. 111, pp. 529- 530 ,(1923) , 10.1038/108529C0