Assembly Line Polyketide Synthases: Mechanistic Insights and Unsolved Problems

作者: Chaitan Khosla , Daniel Herschlag , David E. Cane , Christopher T. Walsh

DOI: 10.1021/BI500290T

关键词:

摘要: Two hallmarks of assembly line polyketide synthases have motivated an interest in these unusual multienzyme systems, their stereospecificity and capacity for directional biosynthesis. In this review, we summarize the state knowledge regarding mechanistic origins two remarkable features, using 6-deoxyerythronolide B synthase as a prototype. Of 10 stereocenters B, stereochemistry nine carbon atoms is directly set by ketoreductase domains, which catalyze epimerization and/or diastereospecific reduction reactions. The 10th stereocenter established sequential action three enzymatic domains. Thus, problem has been reduced to challenge mainstream enzymology, where fundamental gaps remain our understanding structural basis exquisite stereochemical control relatively well-defined active sites. contrast, testable hypotheses phenomenon vectorial biosynthesis are only just beginning emerge. Starting from elegant theoretical framework coupled processes biology [Jencks, W. P. (1980) Adv. Enzymol. Relat. Areas Mol. Biol. 51, 75–106], present simple model that can explain process. Our model, highlights important role domain–domain interactions, not consistent with recent observations but also amenable further experimental verification refinement. Ultimately, definitive view coordinated motions within between modules will require combination structural, kinetic, spectroscopic, computational tools could be one most exciting frontiers 21st Century enzymology.

参考文章(39)
William P. Jencks, The Utilization of Binding Energy in Coupled Vectorial Processes Advances in Enzymology - and Related Areas of Molecular Biology. ,vol. 51, pp. 75- 106 ,(2006) , 10.1002/9780470122969.CH2
Paul D. Boyer, The ATP Synthase—A Splendid Molecular Machine Annual Review of Biochemistry. ,vol. 66, pp. 717- 749 ,(1997) , 10.1146/ANNUREV.BIOCHEM.66.1.717
Adrian Keatinge-Clay, Crystal Structure of the Erythromycin Polyketide Synthase Dehydratase Journal of Molecular Biology. ,vol. 384, pp. 941- 953 ,(2008) , 10.1016/J.JMB.2008.09.084
Shaun K. Olsen, Christopher D. Lima, Structure of a Ubiquitin E1-E2 Complex: Insights to E1-E2 Thioester Transfer Molecular Cell. ,vol. 49, pp. 884- 896 ,(2013) , 10.1016/J.MOLCEL.2013.01.013
Ashish Garg, Chaitan Khosla, David E. Cane, Coupled methyl group epimerization and reduction by polyketide synthase ketoreductase domains. Ketoreductase-catalyzed equilibrium isotope exchange. Journal of the American Chemical Society. ,vol. 135, pp. 16324- 16327 ,(2013) , 10.1021/JA408944S
Adrian T. Keatinge-Clay, A Tylosin Ketoreductase Reveals How Chirality Is Determined in Polyketides Chemistry & Biology. ,vol. 14, pp. 898- 908 ,(2007) , 10.1016/J.CHEMBIOL.2007.07.009
Ralph Reid, Misty Piagentini, Eduardo Rodriguez, Gary Ashley, Nina Viswanathan, John Carney, Daniel V. Santi, C. Richard Hutchinson, Robert McDaniel, A Model of Structure and Catalysis for Ketoreductase Domains in Modular Polyketide Synthases Biochemistry. ,vol. 42, pp. 72- 79 ,(2003) , 10.1021/BI0268706
David H. Kwan, Yuhui Sun, Frank Schulz, Hui Hong, Bojana Popovic, Joalice C.C. Sim-Stark, Stephen F. Haydock, Peter F. Leadlay, Prediction and Manipulation of the Stereochemistry of Enoylreduction in Modular Polyketide Synthases Chemistry & Biology. ,vol. 15, pp. 1231- 1240 ,(2008) , 10.1016/J.CHEMBIOL.2008.09.012
Louise K. Charkoudian, Corey W. Liu, Stefania Capone, Shiven Kapur, David E. Cane, Antonio Togni, Dieter Seebach, Chaitan Khosla, Probing the interactions of an acyl carrier protein domain from the 6-deoxyerythronolide B synthase Protein Science. ,vol. 20, pp. 1244- 1255 ,(2011) , 10.1002/PRO.652