Advantages and limitations of quantitative PCR (Q‐PCR)‐based approaches in microbial ecology

M J Brisco, A A Morley, P J Sykes, E Hughes, J Condon, S H Neoh, Quantitation of targets for PCR by use of limiting dilution. BioTechniques. ,vol. 13, pp. 444- 449 ,(1992)

Tillmann Lueders, Bianca Wagner, Peter Claus, Michael W. Friedrich, Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil. Environmental Microbiology. ,vol. 6, pp. 60- 72 ,(2003) , 10.1046/J.1462-2920.2003.00535.X

Stefan Radajewski, Philip Ineson, Nisha R. Parekh, J. Colin Murrell, Stable-isotope probing as a tool in microbial ecology Nature. ,vol. 403, pp. 646- 649 ,(2000) , 10.1038/35001054

Carl T. Wittwer, Mark G. Herrmann, Alan A. Moss, Randy P. Rasmussen, Continuous fluorescence monitoring of rapid cycle DNA amplification. BioTechniques. ,vol. 22, pp. 130- 138 ,(1997) , 10.2144/000114043

Alexander H. Treusch, Sven Leininger, Arnulf Kletzin, Stephan C. Schuster, Hans-Peter Klenk, Christa Schleper, Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environmental Microbiology. ,vol. 7, pp. 1985- 1995 ,(2005) , 10.1111/J.1462-2920.2005.00906.X

Young‐Beom Ahn, Max M Häggblom, Lee J Kerkhof, Comparison of anaerobic microbial communities from Estuarine sediments amended with halogenated compounds to enhance dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin. FEMS Microbiology Ecology. ,vol. 61, pp. 362- 371 ,(2007) , 10.1111/J.1574-6941.2007.00342.X

Stuart E. Denman, Nigel W. Tomkins, Christopher S. McSweeney, Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane. FEMS Microbiology Ecology. ,vol. 62, pp. 313- 322 ,(2007) , 10.1111/J.1574-6941.2007.00394.X

Laure Vieublé Gonod, Fabrice Martin-Laurent, Claire Chenu, 2,4-D impact on bacterial communities, and the activity and genetic potential of 2,4-D degrading communities in soil FEMS Microbiology Ecology. ,vol. 58, pp. 529- 537 ,(2006) , 10.1111/J.1574-6941.2006.00159.X

Robert A Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean M Peterson, Martin O Saar, Scott Alexander, E Calvin Alexander, Forest Rohwer, Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. ,vol. 7, pp. 57- 57 ,(2006) , 10.1186/1471-2164-7-57

Eric Smit, Paula Leeflang, Boet Glandorf, Jan Dirk van Elsas, Karel Wernars, Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Applied and Environmental Microbiology. ,vol. 65, pp. 2614- 2621 ,(1999) , 10.1128/AEM.65.6.2614-2621.1999