jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data
作者： Florian Reisinger , Ritesh Krishna , Fawaz Ghali , Daniel Ríos , Henning Hermjakob
关键词:
摘要: We present a Java application programming interface (API), jmzIdentML, for the Human Proteome Organisation (HUPO) Proteomics Standards Initiative (PSI) mzIdentML standard peptide and protein identification data. The API combines power of Architecture XML Binding (JAXB) an XPath-based random-access indexer to allow fast efficient mapping extensible markup language (XML) elements objects. internal references in files are resolved on-demand manner, where whole file is accessed as swap file, only relevant piece XMLis selected its corresponding object. APIis highly memory usage can handle arbitrary sizes. APIfollows official release (version 1.1) specifications available public domain under permissive licence at http://www.code.google.com/p/jmzidentml/.
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