Site-specific protein labeling using PRIME and chelation-assisted click chemistry

作者: Chayasith Uttamapinant , Mateo I Sanchez , Daniel S Liu , Jennifer Z Yao , Katharine A White

DOI: 10.1038/NPROT.2013.096

关键词:

摘要: This protocol describes an efficient method to site-specifically label cell-surface or purified proteins with chemical probes in two steps: probe incorporation mediated by enzymes (PRIME) followed chelation-assisted copper-catalyzed azide-alkyne cycloaddition (CuAAC). In the PRIME step, Escherichia coli lipoic acid ligase (LplA) attaches a picolyl azide (pAz) derivative 13-aa recognition sequence that has been genetically fused onto protein of interest. Proteins bearing pAz are chemoselectively derivatized alkyne-probe conjugate CuAAC second step. We describe herein optimized protocols synthesize perform labeling and achieve derivatization on live cells, fixed cells proteins. Reagent preparations, including synthesis expression LplA, take 12 d, whereas procedure for performing site-specific ligation takes 40 min-3 h.

参考文章(31)
Stanislav I. Presolski, Vu Phong Hong, M.G. Finn, Copper-Catalyzed Azide–Alkyne Click Chemistry for Bioconjugation Current protocols in chemical biology. ,vol. 3, pp. 153- 162 ,(2011) , 10.1002/9780470559277.CH110148
Sujiet Puthenveetil, Daniel S Liu, Katharine A White, Samuel Thompson, Alice Y Ting, None, Yeast display evolution of a kinetically efficient 13-amino acid substrate for lipoic acid ligase. Journal of the American Chemical Society. ,vol. 131, pp. 16430- 16438 ,(2009) , 10.1021/JA904596F
Mark Howarth, Alice Y Ting, Imaging proteins in live mammalian cells with biotin ligase and monovalent streptavidin Nature Protocols. ,vol. 3, pp. 534- 545 ,(2008) , 10.1038/NPROT.2008.20
Mark Howarth, Wenhao Liu, Sujiet Puthenveetil, Yi Zheng, Lisa F Marshall, Michael M Schmidt, K Dane Wittrup, Moungi G Bawendi, Alice Y Ting, Monovalent, reduced-size quantum dots for imaging receptors on living cells Nature Methods. ,vol. 5, pp. 397- 399 ,(2008) , 10.1038/NMETH.1206
Peng Zou, Alice Y. Ting, Imaging LDL receptor oligomerization during endocytosis using a co-internalization assay. ACS Chemical Biology. ,vol. 6, pp. 308- 313 ,(2011) , 10.1021/CB100361K
R.R. Kellner, C.J. Baier, K.I. Willig, S.W. Hell, F.J. Barrantes, Nanoscale organization of nicotinic acetylcholine receptors revealed by stimulated emission depletion microscopy Neuroscience. ,vol. 144, pp. 135- 143 ,(2007) , 10.1016/J.NEUROSCIENCE.2006.08.071
Hemanta Baruah, Sujiet Puthenveetil, Yoon-Aa Choi, Samit Shah, Alice Y. Ting, An Engineered Aryl Azide Ligase for Site‐Specific Mapping of Protein–Protein Interactions through Photo‐Cross‐Linking Angewandte Chemie. ,vol. 47, pp. 7018- 7021 ,(2008) , 10.1002/ANIE.200802088
J. C. Carrington, W. G. Dougherty, A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 85, pp. 3391- 3395 ,(1988) , 10.1073/PNAS.85.10.3391
Anouk Dirksen, Sjoerd Dirksen, Tilman M. Hackeng, Philip E. Dawson, Nucleophilic catalysis of hydrazone formation and transimination: implications for dynamic covalent chemistry. Journal of the American Chemical Society. ,vol. 128, pp. 15602- 15603 ,(2006) , 10.1021/JA067189K
Daniel S Liu*, Ken H Loh*, Stephanie S Lam, Katharine A White, Alice Y Ting, None, Imaging Trans-Cellular Neurexin-Neuroligin Interactions by Enzymatic Probe Ligation PLoS ONE. ,vol. 8, pp. e52823- ,(2013) , 10.1371/JOURNAL.PONE.0052823