iBarcode.org: web-based molecular biodiversity analysis
作者： Gregory AC Singer , Mehrdad Hajibabaei
DOI: 10.1186/1471-2105-10-S6-S14
关键词:
摘要: Background DNA sequences have become a primary source of information in biodiversity analysis. For example, short standardized species-specific genomic regions, DNA barcodes, are being used as global standard for species identification and studies. Most barcodes generated by laboratories that an expertise sequencing but not bioinformatics data Therefore, we developed web-based suite tools to help the barcode researchers analyze their vast datasets.
biomedcentral.com
springer.com
paperity.org参考文章(17)
E. Marshall, TAXONOMY: Will DNA Bar Codes Breathe Life Into Classification? Science. ,vol. 307, pp. 1037- 1037 ,(2005) , 10.1126/SCIENCE.307.5712.1037
William J. Murphy, Pavel A. Pevzner, Stephen J. O'Brien, Mammalian phylogenomics comes of age Trends in Genetics. ,vol. 20, pp. 631- 639 ,(2004) , 10.1016/J.TIG.2004.09.005
Mehrdad Hajibabaei, Gregory AC Singer, Elizabeth L Clare, Paul DN Hebert, Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring BMC Biology. ,vol. 5, pp. 24- 24 ,(2007) , 10.1186/1741-7007-5-24
John H. McDonald, Martin Kreitman, Adaptive protein evolution at the Adh locus in Drosophila Nature. ,vol. 351, pp. 652- 654 ,(1991) , 10.1038/351652A0
Mehrdad Hajibabaei, Gregory AC Singer, Donal A Hickey, Benchmarking DNA barcodes: An assessment using available primate sequences. Genome. ,vol. 49, pp. 851- 854 ,(2006) , 10.1139/G06-025
Paul D. N Hebert, Mark Y Stoeckle, Tyler S Zemlak, Charles M Francis, Identification of Birds through DNA Barcodes PLoS Biology. ,vol. 2, pp. e312- ,(2004) , 10.1371/JOURNAL.PBIO.0020312
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution. ,vol. 4, pp. 406- 425 ,(1987) , 10.1093/OXFORDJOURNALS.MOLBEV.A040454
Paul D. N. Hebert, Alina Cywinska, Shelley L. Ball, Jeremy R. deWaard, Biological identifications through DNA barcodes Proceedings of The Royal Society B: Biological Sciences. ,vol. 270, pp. 313- 321 ,(2003) , 10.1098/RSPB.2002.2218
Ziheng Yang, Rasmus Nielsen, Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models Molecular Biology and Evolution. ,vol. 17, pp. 32- 43 ,(2000) , 10.1093/OXFORDJOURNALS.MOLBEV.A026236
ELIZABETH L. CLARE, BURTON K. LIM, MARK D. ENGSTROM, JUDITH L. EGER, PAUL D. N. HEBERT, DNA barcoding of Neotropical bats: species identification and discovery within Guyana Molecular Ecology Notes. ,vol. 7, pp. 184- 190 ,(2007) , 10.1111/J.1471-8286.2006.01657.X