Building freshwater macroinvertebrate DNA-barcode libraries from reference collection material: formalin preservation vs specimen age

作者: Donald J. Baird , Timothy J. Pascoe , Xin Zhou , Mehrdad Hajibabaei

DOI: 10.1899/10-013.1

关键词:

摘要: AbstractAs part of its ongoing work in biomonitoring, Environment Canada’s Canadian Aquatic Biomonitoring Network (CABIN) program has assembled an expert-verified reference collection 3864 specimens 604 species freshwater macroinvertebrates. Such collections are a key resource for developing deoxyribonucleic acid (DNA) barcode library to facilitate molecular identification biomonitoring samples. We examined the problems encountered using such legacy material obtain barcodes. focused on influence specimen age and preservation history. To supplement collection, we determined time-dependent effects formalin DNA-barcode integrity 4 common arthropod taxa by controlled exposure fresh obtained from laboratory cultures. Specimens were preserved with short-term fixation followed prolonged 70% ethanol. Only 19 caddisfly larval out to...

参考文章(19)
NATALIA V. IVANOVA, JEREMY R. DEWAARD, PAUL D. N. HEBERT, An inexpensive, automation-friendly protocol for recovering high-quality DNA Molecular Ecology Notes. ,vol. 6, pp. 998- 1002 ,(2006) , 10.1111/J.1471-8286.2006.01428.X
Xin Zhou, Sarah J Adamowicz, Luke M Jacobus, R Edward DeWalt, Paul DN Hebert, None, Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada Frontiers in Zoology. ,vol. 6, pp. 30- 30 ,(2009) , 10.1186/1742-9994-6-30
Trefor B. Reynoldson, Sherri P. Thompson, Jennifer L. Bamsey, A sediment bioassay using the tubificid oligochaete wormTubifex tubifex Environmental Toxicology and Chemistry. ,vol. 10, pp. 1061- 1072 ,(1991) , 10.1002/ETC.5620100811
Danielle Milani, Trefor B. Reynoldson, Uwe Borgmann, Jurek Kolasa, The relative sensitivity of four benthic invertebrates to metals in spiked‐sediment exposures and application to contaminated field sediment Environmental Toxicology and Chemistry. ,vol. 22, pp. 845- 854 ,(2003) , 10.1002/ETC.5620220424
Gregory AC Singer, Mehrdad Hajibabaei, iBarcode.org: web-based molecular biodiversity analysis BMC Bioinformatics. ,vol. 10, pp. 1- 6 ,(2009) , 10.1186/1471-2105-10-S6-S14
U. Borgmann, K. M. Ralph, W. P. Norwood, Toxicity test procedures for Hyalella azteca , and chronic toxicity of cadmium and pentachlorophenol to H. azteca, Gammarus fasciatus , and Daphnia magna Archives of Environmental Contamination and Toxicology. ,vol. 18, pp. 756- 764 ,(1989) , 10.1007/BF01225013
Morten Skage, Christoffer Schander, DNA from formalin-fixed tissue: extraction or repair? That is the question Marine Biology Research. ,vol. 3, pp. 289- 295 ,(2007) , 10.1080/17451000701473942
Isabelle Meusnier, Gregory AC Singer, Jean-François Landry, Donal A Hickey, Paul DN Hebert, Mehrdad Hajibabaei, A universal DNA mini-barcode for biodiversity analysis BMC Genomics. ,vol. 9, pp. 214- 214 ,(2008) , 10.1186/1471-2164-9-214
Paul D. N. Hebert, Alina Cywinska, Shelley L. Ball, Jeremy R. deWaard, Biological identifications through DNA barcodes Proceedings of The Royal Society B: Biological Sciences. ,vol. 270, pp. 313- 321 ,(2003) , 10.1098/RSPB.2002.2218
K. Tamura, J. Dudley, M. Nei, S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Molecular Biology and Evolution. ,vol. 24, pp. 1596- 1599 ,(2007) , 10.1093/MOLBEV/MSM092