A method for typing polymorphism at the HLA‐A locus using PCR amplification and immobilized oligonucleotide probes

作者: Teodorica L. Bugawan , Raymond Apple , Henry A. Erlich

DOI: 10.1111/J.1399-0039.1994.TB02371.X

关键词:

摘要: We have developed a simple and rapid method for DNA typing of the HLA-A locus using PCR amplification hybridization product, labeled with biotinylated primers, to an array immobilized oligonucleotide probes in single reaction (reverse dot or line blot). A primer set (RAP1007 DB337) is used specifically amplify 990-bp fragment containing exons 1, 2, 3 from genomic DNA. This locus-specific amplifies all alleles. 51 sequence-specific (SSO) probes, 25 exon 2 26 3, was nylon membrane by UV-crosslinking poly-thymidine "tail" added terminal transferase. In blot format, 50 SSO plus control probe are on strip. The amplified variety samples. These can identify 37 homozygous analysis heterozygous samples, 604 types out 633 (95.4%) possible patterns be detected as unique reactivity pattern. computer program has been assign alleles genotypes based

参考文章(29)
W. Klitz, T. L. Bugawan, J. D. Chang, H. A. Erlich, PCR/oligonucleotide probe typing of HLA class II alleles in a Filipino population reveals an unusual distribution of HLA haplotypes. American Journal of Human Genetics. ,vol. 54, pp. 331- 340 ,(1994)
George Herrin, Nicola Fildes, Rebecca Reynolds, Evaluation of the AmpliType® PM DNA Test System on Forensic Case Samples Journal of Forensic Sciences. ,vol. 39, pp. 13710J- 1253 ,(1994) , 10.1520/JFS13710J
Edward Blake, Jennifer Mihalovich, Russell Higuchi, P. Sean Walsh, Henry Erlich, Polymerase Chain Reaction (PCR) Amplification and Human Leukocyte Antigen (HLA)-DQα Oligonucleotide Typing on Biological Evidence Samples: Casework Experience Journal of Forensic Sciences. ,vol. 37, pp. 700- 726 ,(1992) , 10.1520/JFS11984J
T. L. Bugawan, G. T. Horn, J. A. Hansen, E. M. Mickelson, G. Angelini, G. B. Ferrara, C. M. Long, H. A. Erlich, Analysis of HLA-DP Allelic Sequence Polymorphism Using the In Vitro Enzymatic Amplification of DPα and DPβ Loci Immunobiology of HLA. ,vol. 141, pp. 321- 322 ,(1989) , 10.1007/978-3-662-39946-0_119
William Klitz, Mark Stoneking, Rhea Helmuth, Norma Schmill, C. Gorodezky, Henry A. Erlich, Russell Higuchi, Michael C. Luce, Nicola Fildes, J. Chimera, Edward Blake, Roberta Madej, HLA-DQα allele and genotype frequencies in various human populations determined by using enzymatic amplification and oligonucleotide probes American Journal of Human Genetics. ,vol. 47, pp. 515- 523 ,(1990)
O. Rickards, G. F. De Stefano, H. A. Erlich, E. A. Titus-Trachtenberg, Analysis of HLA class II haplotypes in the Cayapa Indians of Ecuador: a novel DRB1 allele reveals evidence for convergent evolution and balancing selection at position 86. American Journal of Human Genetics. ,vol. 55, pp. 160- 167 ,(1994)
Karine N Traill, Lukas A Huber, Georg Wick, Günther Jürgens, Lipoprotein interactions with T cells: an update Immunology Today. ,vol. 11, pp. 411- 417 ,(1990) , 10.1016/0167-5699(90)90161-2
Xiaojiang Gao, Paul Zimmet, Susan W. Serjeantson, HLA-DR,DQ sequence polymorphisms in Polynesians, Micronesians, and Javanese. Human Immunology. ,vol. 34, pp. 153- 161 ,(1992) , 10.1016/0198-8859(92)90107-X
A.V.S. Hill, C.E.M. Allsopp, A.J. McMichael, D. Kwiatkowski, N.M. Anstey, B.M. Greenwood, HLA class I typing by PCR: HLA-B27 and an African B27 subtype The Lancet. ,vol. 337, pp. 640- 642 ,(1991) , 10.1016/0140-6736(91)92452-8