SNAD: sequence name annotation-based designer

作者: Igor A Sidorov , Denis A Reshetov , Alexander E Gorbalenya

DOI: 10.1186/1471-2105-10-251

关键词:

摘要: Background A growing diversity of biological data is tagged with unique identifiers (UIDs) associated polynucleotides and proteins to ensure efficient computer-mediated storage, maintenance, processing. These identifiers, which are not informative for most people, often substituted by biologically meaningful names in various presentations facilitate utilization dissemination sequence-based knowledge. This substitution commonly done manually that may be a tedious exercise prone mistakes omissions.

参考文章(27)
Katerina Michalickova, Gary D Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher WV Hogue, SeqHound: biological sequence and structure database as a platform for bioinformatics research BMC Bioinformatics. ,vol. 3, pp. 32- 32 ,(2002) , 10.1186/1471-2105-3-32
Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte, IDconverter and IDClight: Conversion and annotation of gene and protein IDs BMC Bioinformatics. ,vol. 8, pp. 9- 9 ,(2007) , 10.1186/1471-2105-8-9
Claude Fauquet, U. Desselberger, L.A. Ball, Mayo, J. Maniloff, Virus taxonomy : eighth report of the International Committee on Taxonomy of Viruses ,(2005)
Rémi N Charrel, Xavier de Lamballerie, Sébastien Emonet, Phylogeny of the genus Arenavirus. Current Opinion in Microbiology. ,vol. 11, pp. 362- 368 ,(2008) , 10.1016/J.MIB.2008.06.001
J. R. Coleman, D. Papamichail, S. Skiena, B. Futcher, E. Wimmer, S. Mueller, Virus attenuation by genome-scale changes in codon pair bias. Science. ,vol. 320, pp. 1784- 1787 ,(2008) , 10.1126/SCIENCE.1155761
M. H. V. van Regenmortel, M. A. Mayo, C. M. Fauquet, J. Maniloff, Virus nomenclature: consensus versus chaos. Archives of Virology. ,vol. 145, pp. 2227- 2232 ,(2000) , 10.1007/S007050070053
C. M. Fauquet, R. W. Briddon, J. K. Brown, E. Moriones, J. Stanley, M. Zerbini, X. Zhou, Geminivirus strain demarcation and nomenclature Archives of Virology. ,vol. 153, pp. 783- 821 ,(2008) , 10.1007/S00705-008-0037-6
Mark J. Schreiber, Swee Hoe Ong, Richard C.G. Holland, Martin L. Hibberd, Subhash G. Vasudevan, Wayne P. Mitchell, Edward C. Holmes, DengueInfo: A web portal to dengue information resources. Infection, Genetics and Evolution. ,vol. 7, pp. 540- 541 ,(2007) , 10.1016/J.MEEGID.2007.02.002