A dimensionless fit measure for phylogenetic distance trees.

MANUEL GIL , CHRISTOPHE DESSIMOZ , GASTON H. GONNET
Journal of Bioinformatics and Computational Biology 3 ( 6) 1429 -1440

4
2005
Orthology: Definitions, Prediction, and Impact on Species Phylogeny Inference

Christophe Dessimoz , Toni Gabaldon , Toni Gabaldon , Rosa Fernández
No commercial publisher | Authors open access book

4
2020
Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism.

Christophe Dessimoz , Stefan Zoller , Jukka Jokela , Jukka Jokela
Genome Biology and Evolution 13 ( 3)

2021
Want to track pandemic variants faster? Fix the bioinformatics bottleneck.

Christophe Dessimoz , Rob Lanfear , Nick Goldman , Emma B Hodcroft
Nature 591 ( 7848) 30 -33

72
2021
Ten years of collaborative progress in the Quest for Orthologs.

Benjamin Linard , Ingo Ebersberger , Shawn Mcglynn , Natasha Glover
Molecular Biology and Evolution

14
2021
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.

Christophe Dessimoz , Marc Robinson-Rechavi , Marc Robinson-Rechavi , Alex Warwick Vesztrocy
Bioinformatics

2021
Homoeolog inference methods requiring bidirectional best hits or synteny miss many pairs.

Christophe Dessimoz , Natasha Glover , Natasha Glover , Shaoline Sheppard
Genome Biology and Evolution

2021
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data.

Christophe Dessimoz , Marc Robinson-Rechavi , Tarcisio Mendes de Farias , Maria Anisimova
arXiv: Databases

2021
Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes

Mark T Holder , Derrick J Zwickl , Christophe Dessimoz
Philosophical Transactions of the Royal Society B 363 ( 1512) 4013 -4021

43
2008
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise

Christophe Dessimoz , Manuel Gil
BMC Evolutionary Biology 8 ( 1) 179 -179

4
2008
Genomic Encryption of Digital Data Stored in Synthetic DNA.

Robert N. Grass , Reinhard Heckel , Christophe Dessimoz , Wendelin J. Stark
Angewandte Chemie 59 ( 22) 8476 -8480

2
2020
Inferring orthology and paralogy.

Adrian M. Altenhoff , Natasha M. Glover , Christophe Dessimoz
Methods of Molecular Biology 1910 149 -175

69
2012
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

Adrian M. Altenhoff , Christophe Dessimoz
PLoS Computational Biology 5 ( 1) e1000262

344
2009
Quality of Computationally Inferred Gene Ontology Annotations

Nives Škunca , Adrian Altenhoff , Christophe Dessimoz
PLoS Computational Biology 8 ( 5) e1002533

104
2012
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

Adrian M. Altenhoff , Romain A. Studer , Marc Robinson-Rechavi , Christophe Dessimoz
PLoS Computational Biology 8 ( 5) e1002514

231
2012
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.

Adrian M Altenhoff , Clément-Marie Train , Kimberly J Gilbert , Ishita Mediratta
Nucleic Acids Research 49

81
2021
The Quest for Orthologs benchmark service and consensus calls in 2020.

Adrian M Altenhoff , Javier Garrayo-Ventas , Salvatore Cosentino , David Emms
Nucleic Acids Research 48

10
2020
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree

Brigitte Boeckmann , David Dylus , Sebastien Moretti , Adrian Altenhoff
bioRxiv 181966

4
2017
Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

Salvador Capella-Gutierrez , Diana de la Iglesia , Juergen Haas , Analia Lourenco
bioRxiv 181677

11
2017
Enabling Semantic Queries Across Federated Bioinformatics Databases

Ana Claudia Sima , Tarcisio Mendes de Farias , Erich Zbinden , Maria Anisimova
bioRxiv 686600

34
2019