Accurate and efficient reconstruction of deep phylogenies from structured RNAs - Supplemental Material -
Roman R. Stocsits , Bernhard Misof , Harald Letsch , Jana Hertel
1
2009
Accurate and efficient reconstruction of deep phylogenies from structured RNAs
Roman R. Stocsits , Harald Letsch , Jana Hertel , Bernhard Misof
Nucleic Acids Research 37 ( 18) 6184 -6193
105
2009
MicroRNA or Not MicroRNA?
David Langenberger , Sebastian Bartschat , Jana Hertel , Steve Hoffmann
Advances in Bioinformatics and Computational Biology 1 -9
14
2011
Conservation and Losses of Non-Coding RNAs in Avian Genomes
Paul P. Gardner , Mario Fasold , Sarah W. Burge , Maria Ninova
PLOS ONE 10 ( 3)
14
2015
The Expansion of Animal MicroRNA Families Revisited
Jana Hertel , Peter Stadler
Life 5 ( 1) 905 -920
38
2015
U6 snRNA intron insertion occurred multiple times during fungi evolution
Sebastian Canzler , Peter F. Stadler , Jana Hertel
RNA Biology 13 ( 2) 119 -127
6
2016
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
Christoph Jöchl , Mathieu Rederstorff , Jana Hertel , Peter F. Stadler
Nucleic Acids Research 36 ( 8) 2677 -2689
136
2008
Evolution of the let-7 microRNA Family
Jana Hertel , Sebastian Bartschat , Axel Wintsche , Christian Otto
RNA Biology 9 ( 3) 231 -241
117
2012
RNAsnoop: efficient target prediction for H/ACA snoRNAs
Hakim Tafer , Stephanie Kehr , Jana Hertel , Ivo L. Hofacker
Bioinformatics 26 ( 5) 610 -616
43
2010
The Coilin Interactome Identifies Hundreds of Small Noncoding RNAs that Traffic through Cajal Bodies
Martin Machyna , Stephanie Kehr , Korinna Straube , Dennis Kappei
Molecular Cell 56 ( 3) 389 -399
57
2014
Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution.
Ali M. Yazbeck , Kifah R. Tout , Peter F. Stadler , Jana Hertel
Journal of Integrative Bioinformatics 14 ( 1)
3
2017
Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera
Oliver Niehuis , Gerrit Hartig , Sonja Grath , Hans Pohl
Current Biology 22 ( 14) 1309 -1313
122
2012
SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.
João Victor de Araujo Oliveira , Fabrizio Costa , Rolf Backofen , Peter Florian Stadler
BMC Bioinformatics 17 ( 18) 464
10
2016
NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences
Dominic Rose , Jana Hertel , Kristin Reiche , Peter F. Stadler
Genomics 92 ( 1) 65 -74
18
2008
An updated human snoRNAome
Hadi Jorjani , Stephanie Kehr , Dominik J. Jedlinski , Rafal Gumienny
Nucleic Acids Research 44 ( 11) 5068 -5082
117
2016
Phylogenetic distribution of plant snoRNA families
Deblina Patra Bhattacharya , Sebastian Canzler , Stephanie Kehr , Jana Hertel
BMC Genomics 17 ( 1) 969
6
2016
The expansion of the metazoan microRNA repertoire
Jana Hertel , Manuela Lindemeyer , Kristin Missal , Claudia Fried
BMC Genomics 7 ( 1) 25 -25
291
2006
Computational RNomics of Drosophilids
Dominic Rose , Jörg Hackermüller , Stefan Washietl , Kristin Reiche
BMC Genomics 8 ( 1) 406 -406
46
2007
Evolution of Fungal U3 snoRNAs: Structural Variation and Introns
Sebastian Canzler , Peter Stadler , Jana Hertel
Non-Coding RNA 3 ( 1) 3
1
2017
Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum
Claudia S Copeland , Manja Marz , Dominic Rose , Jana Hertel
BMC Genomics 10 ( 1) 464 -464
49
2009