Discovering candidates for gene network expansion by variable subsetting and ranking aggregation

Andrea Argentini , Giulia Malacarne , Kristof Engelen , Luca Masera
F1000Research 4

2015
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.

Tim D. Spector , Nicola Segata , Nicola Segata , Curtis Huttenhower
Nature Medicine 27 ( 2) 321 -332

332
2021
High intake of vegetables is linked to lower white blood cell profile and the effect is mediated by the gut microbiome.

Tim D. Spector , Nicola Segata , Cristina Menni , Stuart Astbury
BMC Medicine 19 ( 1) 37 -37

2
2021
Blue poo: impact of gut transit time on the gut microbiome using a novel marker.

Timothy D Spector , Nicola Segata , Eirini Dimidi , Paul W Franks
Gut

2021
Microbial ACBP/DBI-like genes are rare in the human gut microbiome and show no links with obesity

Nicola Segata , Nicola Segata , Guido Kroemer , Francesco Asnicar
Applied and Environmental Microbiology 87 ( 12)

2021
Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

Marco Erreni , Nicola Segata , Salvatore Pece , Salvatore Pece
Cancer Cell 39 ( 5)

95
2021
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3.

Nicola Segata , Nicola Segata , Eric A Franzosa , Eric A Franzosa
eLife 10

441
2021
Gut microbiome diversity and composition is associated with hypertension in women.

Tim D Spector , Nicola Segata , Claire J Steves , Cristina Menni
Journal of Hypertension

12
2021
Human postprandial responses to food and potential for precision nutrition.

Elco Bakker , Deborah Hart , Massimo Mangino , Jordi Merino
Nature Medicine 26 ( 6) 964 -973

340
2020
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

Adrian Tett , Kun D. Huang , Francesco Asnicar , Hannah Fehlner-Peach
Cell Host & Microbe 26 ( 5) 666

232
2019
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Moran Yassour , Eeva Jason , Larson J. Hogstrom , Timothy D. Arthur
Cell Host & Microbe 24 ( 1) 146

271
2018
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Pamela Ferretti , Edoardo Pasolli , Adrian Tett , Francesco Asnicar
Cell Host & Microbe 24 ( 1) 133

299
2018
A Computing System for Discovering Causal Relationships among Human Genes to Improve Drug Repositioning

Enrico Blanzieri , Toma Tebaldi , Valter Cavecchia , Francesco Asnicar
IEEE Transactions on Emerging Topics in Computing

2020
Compact graphical representation of phylogenetic data and metadata with GraPhlAn

Francesco Asnicar , George Weingart , Timothy L. Tickle , Curtis Huttenhower
PeerJ 3

587
2015
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

Francesco Asnicar , Andrew Maltez Thomas , Francesco Beghini , Claudia Mengoni
Nature Communications 11 ( 1) 2500

223
2020
Ketogenic diet and ketone bodies enhance the anticancer effects of PD-1 blockade

Gladys Ferrere , Maryam Tidjani Alou , Peng Liu , Anne-Gaëlle Goubet
JCI insight 6 ( 2) 145207

93
2021
Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

Federica Pinto , Adrian Tett , Federica Armanini , Francesco Asnicar
Genome Announcements 6 ( 5)

2018
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing.

Claudio Donati , Moreno Zolfo , Davide Albanese , Duy Tin Truong
Nature microbiology 1 ( 7) 16070 -16070

35
2016
Profiling microbial strains in urban environments using metagenomic sequencing data.

Moreno Zolfo , Francesco Asnicar , Paolo Manghi , Edoardo Pasolli
Biology Direct 13 ( 1) 9 -9

17
2018