Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

作者: CORNELIU HENEGAR , RAFFAELLA CANCELLO , SOPHIE ROME , HUBERT VIDAL , KARINE CLÉMENT

DOI: 10.1142/S0219720006002181

关键词: GeneticsCluster analysisBiologyFunctional profilingMicroarray gene expressionGene Expression Pattern AnalysisGene expression

摘要: Motivation: Functional profiling is a key step of microarray gene expression data analysis. Identifying co-regulated biological processes could help for better understanding underlying biologica...

参考文章(48)
Sorin Drǎghici, Purvesh Khatri, Rui P. Martins, G.Charles Ostermeier, Stephen A. Krawetz, Global functional profiling of gene expression. Genomics. ,vol. 81, pp. 98- 104 ,(2003) , 10.1016/S0888-7543(02)00021-6
Dominic J Allocco, Isaac S Kohane, Atul J Butte, Quantifying the relationship between co-expression, co-regulation and gene function BMC Bioinformatics. ,vol. 5, pp. 18- 18 ,(2004) , 10.1186/1471-2105-5-18
D. E. Kelley, J. P. Reilly, T. Veneman, L. J. Mandarino, Effects of insulin on skeletal muscle glucose storage, oxidation, and glycolysis in humans American Journal of Physiology-endocrinology and Metabolism. ,vol. 258, ,(1990) , 10.1152/AJPENDO.1990.258.6.E923
R. M. O'Brien, D. K. Granner, Regulation of gene expression by insulin. Physiological Reviews. ,vol. 76, pp. 1109- 1161 ,(1996) , 10.1152/PHYSREV.1996.76.4.1109
J. D. Storey, R. Tibshirani, Statistical significance for genomewide studies Proceedings of the National Academy of Sciences of the United States of America. ,vol. 100, pp. 9440- 9445 ,(2003) , 10.1073/PNAS.1530509100
E. A. Richter, J. N. Nielsen, S. B. Jørgensen, C. Frøsig, J. F. P. Wojtaszewski, Signalling to glucose transport in skeletal muscle during exercise. Acta Physiologica Scandinavica. ,vol. 178, pp. 329- 335 ,(2003) , 10.1046/J.1365-201X.2003.01153.X
Sandrine Dudoit, Juliet Popper Shaffer, Jennifer C. Block, Multiple Hypothesis Testing in Microarray Experiments Statistical Science. ,vol. 18, pp. 71- 103 ,(2003) , 10.1214/SS/1056397487
Sophie Rome, Emmanuelle Meugnier, Hubert Vidal, The ubiquitin-proteasome pathway is a new partner for the control of insulin signaling. Current Opinion in Clinical Nutrition and Metabolic Care. ,vol. 7, pp. 249- 254 ,(2004) , 10.1097/00075197-200405000-00002
John N. Fain, Atul K. Madan, M. Lloyd Hiler, Paramjeet Cheema, Suleiman W. Bahouth, Comparison of the Release of Adipokines by Adipose Tissue, Adipose Tissue Matrix, and Adipocytes from Visceral and Subcutaneous Abdominal Adipose Tissues of Obese Humans Endocrinology. ,vol. 145, pp. 2273- 2282 ,(2004) , 10.1210/EN.2003-1336