Core and accessory genome architecture in a group of Pseudomonas aeruginosa Mu-like phages
作者： Adrián Cazares , Guillermo Mendoza-Hernández , Gabriel Guarneros
DOI: 10.1186/1471-2164-15-1146
关键词: Phylogenetics 、 Gene 、 Genome 、 Genetics 、 Horizontal gene transfer 、 Temperateness 、 Biology 、 Transposable element 、 Comparative genomics 、 ORFS
摘要: … On average, the ORFs in the core genome had about three … 6) underscoring the essentiality of core gene functions. On the … originally core genes that were lost from the phage genomes …
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Rob Lavigne, Pieter-Jan Ceyssens, J. Robben, Phage proteomics: applications of mass spectrometry. Methods of Molecular Biology. ,vol. 502, pp. 239- 251 ,(2009) , 10.1007/978-1-60327-565-1_14
Alasdair C. Steven, Heather L. Greenstone, Frank P. Booy, Lindsay W. Black, Philip D. Ross, Conformational changes of a viral capsid protein. Thermodynamic rationale for proteolytic regulation of bacteriophage T4 capsid expansion, co-operativity, and super-stabilization by soc binding. Journal of Molecular Biology. ,vol. 228, pp. 870- 884 ,(1992) , 10.1016/0022-2836(92)90871-G
Mark Borodovsky, Ryan Mills, John Besemer, Alex Lomsadze, Prokaryotic gene prediction using GeneMark and GeneMark.hmm. Current protocols in human genetics. ,vol. 1, ,(2003) , 10.1002/0471250953.BI0405S01
S. J. Labrie, K. Frois-Moniz, M. S. Osburne, L. Kelly, S. E. Roggensack, M. B. Sullivan, G. Gearin, Q. Zeng, M. Fitzgerald, M. R. Henn, S. W. Chisholm, Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environmental Microbiology. ,vol. 15, pp. 1356- 1376 ,(2013) , 10.1111/1462-2920.12053
C.M. van Drunen, E. Mientjes, C. van Zuylen, P. van de Putte, N. Goosen, Transposase A binding sites in the attachment sites of bacteriophage Mu that are essential for the activity of the enhancer and A binding sites that promote transposition towards Fpro-lac Nucleic Acids Research. ,vol. 22, pp. 773- 779 ,(1994) , 10.1093/NAR/22.5.773
Insuk Lee, Rasika M Harshey, Importance of the conserved CA dinucleotide at Mu termini. Journal of Molecular Biology. ,vol. 314, pp. 433- 444 ,(2001) , 10.1006/JMBI.2001.5177
R. M. K. Stewart, L. Wiehlmann, K. E. Ashelford, S. J. Preston, E. Frimmersdorf, B. J. Campbell, T. J. Neal, N. Hall, S. Tuft, S. B. Kaye, C. Winstanley, Genetic Characterization Indicates that a Specific Subpopulation of Pseudomonas aeruginosa Is Associated with Keratitis Infections Journal of Clinical Microbiology. ,vol. 49, pp. 993- 1003 ,(2011) , 10.1128/JCM.02036-10
Hideo Iwai, Patrik Forrer, Andreas Plückthun, Peter Güntert, NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD. Journal of Biomolecular NMR. ,vol. 31, pp. 351- 356 ,(2005) , 10.1007/S10858-005-0945-7
Insuk Lee, Rasika M. Harshey, The Conserved CA/TG motif at Mu termini: T Specifies Stable Transpososome Assembly Journal of Molecular Biology. ,vol. 330, pp. 261- 275 ,(2003) , 10.1016/S0022-2836(03)00574-6
Michael D. Braid, Jennifer L. Silhavy, Christopher L. Kitts, Raul J. Cano, Martha M. Howe, Complete Genomic Sequence of Bacteriophage B3, a Mu-Like Phage of Pseudomonas aeruginosa Journal of Bacteriology. ,vol. 186, pp. 6560- 6574 ,(2004) , 10.1128/JB.186.19.6560-6574.2004