GeneDesign 3.0 is an updated synthetic biology toolkit
作者： Sarah M. Richardson , Paul W. Nunley , Robert M. Yarrington , Jef D. Boeke , Joel S. Bader
DOI: 10.1093/NAR/GKQ143
关键词:
摘要: GeneDesign is a set of web applications that provides public access to nucleotide manipulation pipeline for synthetic biology. The server and freely accessible, the source available download under New BSD License. Since was published made publicly 3 years ago, we have its code base more efficient, added several algorithms modules, updated restriction enzyme library, batch processing capabilities, command line all which briefly describe here.
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core.ac.uk 参考文章(17)
Alan Villalobos, Jon E Ness, Claes Gustafsson, Jeremy Minshull, Sridhar Govindarajan, Gene Designer: a synthetic biology tool for constructing artificial DNA segments BMC Bioinformatics. ,vol. 7, pp. 285- 285 ,(2006) , 10.1186/1471-2105-7-285
Marcus Bode, Samuel Khor, Hongye Ye, Mo-Huang Li, Jackie Y. Ying, TmPrime: fast, flexible oligonucleotide design software for gene synthesis Nucleic Acids Research. ,vol. 37, pp. 214- 221 ,(2009) , 10.1093/NAR/GKP461
Marcelle WILHELM, Mansour BOUTABOUT, François-Xavier WILHELM, Expression of an active form of recombinant Ty1 reverse transcriptase in Escherichia coli: a fusion protein containing the C-terminal region of the Ty1 integrase linked to the reverse transcriptase-RNase H domain exhibits polymerase and RNase H activities. Biochemical Journal. ,vol. 348, pp. 337- 342 ,(2000) , 10.1042/BJ3480337
Mario A Marchisio, Jörg Stelling, Computational design tools for synthetic biology. Current Opinion in Biotechnology. ,vol. 20, pp. 479- 485 ,(2009) , 10.1016/J.COPBIO.2009.08.007
P. Puigbo, E. Guzman, A. Romeu, S. Garcia-Vallve, OPTIMIZER: a web server for optimizing the codon usage of DNA sequences Nucleic Acids Research. ,vol. 35, pp. 126- 131 ,(2007) , 10.1093/NAR/GKM219
Paul M. Sharp, Therese M.F. Tuohy, Krzysztof R. Mosurski, Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes Nucleic Acids Research. ,vol. 14, pp. 5125- 5143 ,(1986) , 10.1093/NAR/14.13.5125
J.-M. Rouillard, W. Lee, G. Truan, X. Gao, X. Zhou, E. Gulari, Gene2Oligo: oligonucleotide design for in vitro gene synthesis Nucleic Acids Research. ,vol. 32, pp. 176- 180 ,(2004) , 10.1093/NAR/GKH401
Mark Welch, Sridhar Govindarajan, Jon E. Ness, Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson, Design Parameters to Control Synthetic Gene Expression in Escherichia coli PLoS ONE. ,vol. 4, pp. e7002- ,(2009) , 10.1371/JOURNAL.PONE.0007002
Jessica S. Dymond, Lisa Z. Scheifele, Sarah Richardson, Pablo Lee, Srinivasan Chandrasegaran, Joel S. Bader, Jef D. Boeke, Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course. Genetics. ,vol. 181, pp. 13- 21 ,(2009) , 10.1534/GENETICS.108.096784
Sarah M Richardson, Sarah J Wheelan, Robert M Yarrington, Jef D Boeke, GeneDesign: Rapid, automated design of multikilobase synthetic genes Genome Research. ,vol. 16, pp. 550- 556 ,(2006) , 10.1101/GR.4431306