Quality scores and SNP detection in sequencing-by-synthesis systems
作者： W. Brockman , P. Alvarez , S. Young , M. Garber , G. Giannoukos
关键词:
摘要: … The quality scores compress a variety of types of information about the … as “new quality scores” and the latter as “old quality scores.” The genomes used all had pre-existing high-quality …
genome.org参考文章(11)
Deborah A Nickerson, Vincent O Tobe, Scott L Taylor, PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing Nucleic Acids Research. ,vol. 25, pp. 2745- 2751 ,(1997) , 10.1093/NAR/25.14.2745
David B Jaffe, Jonathan Butler, Sante Gnerre, Evan Mauceli, Kerstin Lindblad-Toh, Jill P Mesirov, Michael C Zody, Eric S Lander, Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2 Genome Research. ,vol. 13, pp. 91- 96 ,(2003) , 10.1101/GR.828403
TIH Project, None, The International HapMap Project Nature. ,vol. 426, pp. 789- 796 ,(2003) , 10.1038/NATURE02168
, A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms Nature. ,vol. 409, pp. 928- 933 ,(2001) , 10.1038/35057149
Matthew Stephens, James S Sloan, P D Robertson, Paul Scheet, Deborah A Nickerson, Automating sequence-based detection and genotyping of SNPs from diploid samples Nature Genetics. ,vol. 38, pp. 375- 381 ,(2006) , 10.1038/NG1746
Brent Ewing, Phil Green, Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities Genome Research. ,vol. 8, pp. 186- 194 ,(1998) , 10.1101/GR.8.3.186
Brent Ewing, LaDeana Hillier, Michael C. Wendl, Phil Green, Base-calling of automated sequencer traces using Phred. I. accuracy assessment Genome Research. ,vol. 8, pp. 175- 185 ,(1998) , 10.1101/GR.8.3.175
Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun He Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E McDade, Michael P McKenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan Fredrik Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg, None, Genome sequencing in microfabricated high-density picolitre reactors Nature. ,vol. 437, pp. 376- 380 ,(2005) , 10.1038/NATURE03959
David Altshuler, Victor J. Pollara, Chris R. Cowles, William J. Van Etten, Jennifer Baldwin, Lauren Linton, Eric S. Lander, An SNP map of the human genome generated by reduced representation shotgun sequencing Nature. ,vol. 407, pp. 513- 516 ,(2000) , 10.1038/35035083
D. Walther, G. Bartha, M. Morris, Basecalling with LifeTrace. Genome Research. ,vol. 11, pp. 875- 888 ,(2001) , 10.1101/GR.177901