Differential DNA Methylation Correlates with Differential Expression of Angiogenic Factors in Human Heart Failure

作者: Mehregan Movassagh , Mun-Kit Choy , Martin Goddard , Martin R. Bennett , Thomas A. Down

DOI: 10.1371/JOURNAL.PONE.0008564

关键词:

摘要: Epigenetic mechanisms such as microRNA and histone modification are crucially responsible for dysregulated gene expression in heart failure. In contrast, the role of DNA methylation, another well-characterized epigenetic mark, is unknown. order to examine whether human cardiomyopathy different etiologies connected by a unifying pattern methylation pattern, we undertook profiling with ischaemic idiopathic end-stage cardiomyopathic left ventricular (LV) explants from patients who had undergone cardiac transplantation compared normal control. We performed preliminary analysis using methylated-DNA immunoprecipitation-chip (MeDIP-chip), validated differential loci bisulfite-(BS) PCR high throughput sequencing, identified 3 angiogenesis-related genetic that were differentially methylated. Using quantitative RT-PCR, found these genes differed significantly between CM hearts control (p<0.01). Moreover, each individual LV tissue, showed predicted correlation corresponding gene. Thus, exists cardiomyopathy. this series heterogenous explants, was at least genes. While other systems, changes specific genomic usually precede genes, our current findings merit further investigation determine play causative progression

参考文章(42)
Jean-Pierre Issa, CpG island methylator phenotype in cancer Nature Reviews Cancer. ,vol. 4, pp. 988- 993 ,(2004) , 10.1038/NRC1507
Manel Esteller, Epigenetics in Cancer The New England Journal of Medicine. ,vol. 358, pp. 1148- 1159 ,(2008) , 10.1056/NEJMRA072067
Rudolf Jaenisch, Adrian Bird, Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals Nature Genetics. ,vol. 33, pp. 245- 254 ,(2003) , 10.1038/NG1089
Randy L. Jirtle, Michael K. Skinner, Environmental epigenomics and disease susceptibility Nature Reviews Genetics. ,vol. 8, pp. 253- 262 ,(2007) , 10.1038/NRG2045
Howard Cedar, Yehudit Bergman, Linking DNA methylation and histone modification: patterns and paradigms Nature Reviews Genetics. ,vol. 10, pp. 295- 304 ,(2009) , 10.1038/NRG2540
Tibor A. Rauch, Xiwei Wu, Xueyan Zhong, Arthur D. Riggs, Gerd P. Pfeifer, A human B cell methylome at 100−base pair resolution Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 671- 678 ,(2009) , 10.1073/PNAS.0812399106
Thomas A Down, Vardhman K Rakyan, Daniel J Turner, Paul Flicek, Heng Li, Eugene Kulesha, Stefan Gräf, Nathan Johnson, Javier Herrero, Eleni M Tomazou, Natalie P Thorne, Liselotte Bäckdahl, Marlis Herberth, Kevin L Howe, David K Jackson, Marcos M Miretti, John C Marioni, Ewan Birney, Tim J P Hubbard, Richard Durbin, Simon Tavaré, Stephan Beck, A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nature Biotechnology. ,vol. 26, pp. 779- 785 ,(2008) , 10.1038/NBT1414
Z.-J. Su, C. N. Hahn, G. J. Goodall, N. M. Reck, A. F. Leske, A. Davy, G. Kremmidiotis, M. A. Vadas, J. R. Gamble, A vascular cell-restricted RhoGAP, p73RhoGAP, is a key regulator of angiogenesis. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 12212- 12217 ,(2004) , 10.1073/PNAS.0404631101
Anders Bratt, William J Wilson, Boris Troyanovsky, Karin Aase, Reto Kessler, Erwin GV Meir, Lars Holmgren, None, Angiomotin belongs to a novel protein family with conserved coiled-coil and PDZ binding domains. Gene. ,vol. 298, pp. 69- 77 ,(2002) , 10.1016/S0378-1119(02)00928-9
Romain Barrès, Megan E. Osler, Jie Yan, Anna Rune, Tomas Fritz, Kenneth Caidahl, Anna Krook, Juleen R. Zierath, Non-CpG Methylation of the PGC-1α Promoter through DNMT3B Controls Mitochondrial Density Cell Metabolism. ,vol. 10, pp. 189- 198 ,(2009) , 10.1016/J.CMET.2009.07.011