A quantitative analysis software tool for mass spectrometry–based proteomics

Sung Kyu Park , John D Venable , Tao Xu , John R Yates
Nature Methods 5 ( 4) 319 -322

322
2008
Toward objective evaluation of proteomic algorithms

John R Yates , Sung Kyu Robin Park , Claire M Delahunty , Tao Xu
Nature Methods 9 ( 5) 455 -456

28
2012
Digestion and depletion of abundant proteins improves proteomic coverage

Bryan R Fonslow , Benjamin D Stein , Kristofor J Webb , Tao Xu
Nature Methods 10 ( 1) 54 -56

77
2013
New methods of proteome analysis: multidimensional chromatography and mass spectrometry

Michael P Washburn , John R Yates
Trends in Biotechnology 18 27 -30

19
2000
Protein kinase C-η controls CTLA-4–mediated regulatory T cell function

Kok-Fai Kong , Guo Fu , Yaoyang Zhang , Tadashi Yokosuka
Nature Immunology 15 ( 5) 465 -472

88
2014
A TRAF-like motif of the inducible costimulator ICOS controls development of germinal center TFH cells via the kinase TBK1

Christophe Pedros , Yaoyang Zhang , Joyce K Hu , Youn Soo Choi
Nature Immunology 17 ( 7) 825 -833

35
2016
Identification of N-terminally arginylated proteins and peptides by mass spectrometry.

Tao Xu , Catherine C L Wong , Anna Kashina , John R Yates
Nature Protocols 4 ( 3) 325 -332

38
2009
The influence of histidine on cleavage C-terminal to acidic residues in doubly protonated tryptic peptides

Yingying Huang , Vicki H Wysocki , David L Tabb , John R Yates
International Journal of Mass Spectrometry 219 ( 1) 233 -244

57
2002
Comparison of three directly coupled HPLC MS/MS strategies for identification of proteins from complex mixtures: single-dimension LC-MS/MS, 2-phase MudPIT, and 3-phase MudPIT

W.Hayes McDonald , Ryoma Ohi , David T Miyamoto , Timothy J Mitchison
International Journal of Mass Spectrometry 219 ( 1) 245 -251

372
2002
1,089
1998
A Subset of TAFIIs Are Integral Components of the SAGA Complex Required for Nucleosome Acetylation and Transcriptional Stimulation

Patrick A Grant , David Schieltz , Marilyn G Pray-Grant , David J Steger
Cell 94 ( 1) 45 -53

383
1998
Sirt1 mediates neuroprotection from mutant huntingtin by activation of the TORC1 and CREB transcriptional pathway.

Hyunkyung Jeong , Dena E Cohen , Libin Cui , Andrea Supinski
Nature Medicine 18 ( 1) 159 -165

257
2012
Sws1 is a conserved regulator of homologous recombination in eukaryotic cells

Victoria Martín , Charly Chahwan , Hui Gao , Véronique Blais
The EMBO Journal 25 ( 11) 2564 -2574

90
2006
Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans.

Alexander Gottschalk , Ruta B Almedom , Thorsten Schedletzky , Scott D Anderson
The EMBO Journal 24 ( 14) 2566 -2578

129
2005
Molecular analysis of kinetochore architecture in fission yeast.

Xingkun Liu , Ian McLeod , Scott Anderson , John R Yates
The EMBO Journal 24 ( 16) 2919 -2930

113
2005
Elastin: mutational spectrum in supravalvular aortic stenosis.

Kay Metcalfe , Agnes K Rucka , Leslie Smoot , Guenter Hofstadler
European Journal of Human Genetics 8 ( 12) 955 -963

124
2000
Mass spectrometry in high-throughput proteomics: ready for the big time

Tommy Nilsson , Matthias Mann , Ruedi Aebersold , John R Yates III
Nature Methods 7 ( 9) 681 -685

377
2010
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

John D Venable , Meng-Qiu Dong , James Wohlschlegel , Andrew Dillin
Nature Methods 1 ( 1) 39 -45

738
2004
Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book

Rovshan G Sadygov , Daniel Cociorva , John R Yates
Nature Methods 1 ( 3) 195 -202

526
2004
A streamlined platform for high-content functional proteomics of primary human specimens

Nadim Jessani , Sherry Niessen , BinQing Q Wei , Monica Nicolau
Nature Methods 2 ( 9) 691 -697

197
2005