Malaria diagnostics and surveillance in the post-genomic era.
作者： N.W. Lucchi , J. Oberstaller , J.C. Kissinger , V. Udhayakumar
DOI: 10.1159/000345607
关键词:
摘要: Genome sequences are available for 3 human-infecting malaria parasites, Plasmodium falciparum, P. vivax and knowlesi, population genomics data many endemic regions. This review summarizes how genomic have been used to develop new, species-specific molecular targets better diagnosis. The combination of bioinformatics has identify new sequence suitable diagnostic applications assess their viability within the context global variation. selection criteria maximized sensitivity specificity novel targets. At least one target from each species was found be diagnosis with some advantages over existing methods. promise using genome sensitive, genus- or methods other pathogens public health interest is strong. undertaking together what we envision as future in 'omic' era discussed.
cdc.gov
karger.com
sci-hub.se 参考文章(27)
Tonya Mixson-Hayden, Naomi W Lucchi, Venkatachalam Udhayakumar, Evaluation of three PCR-based diagnostic assays for detecting mixed Plasmodium infection BMC Research Notes. ,vol. 3, pp. 88- 88 ,(2010) , 10.1186/1756-0500-3-88
F. Prugnolle, P. Durand, C. Neel, B. Ollomo, F. J. Ayala, C. Arnathau, L. Etienne, E. Mpoudi-Ngole, D. Nkoghe, E. Leroy, E. Delaporte, M. Peeters, F. Renaud, African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 1458- 1463 ,(2010) , 10.1073/PNAS.0914440107
Johanna H. Kattenberg, Inge Versteeg, Stephanie J. Migchelsen, Iveth J. González, Mark D. Perkins, Petra F. Mens, Henk D.F.H. Schallig, New developments in malaria diagnostics Monoclonal antibodies against Plasmodium dihydrofolate reductase-thymidylate synthase, heme detoxification protein and glutamate rich protein mAbs. ,vol. 4, pp. 120- 126 ,(2012) , 10.4161/MABS.4.1.18529
Sarah K. Volkman, Daouda Ndiaye, Mahamadou Diakite, Ousmane A. Koita, Davis Nwakanma, Rachel F. Daniels, Daniel J. Park, Daniel E. Neafsey, Marc A.T. Muskavitch, Donald J. Krogstad, Pardis C. Sabeti, Daniel L. Hartl, Dyann F. Wirth, Application of genomics to field investigations of malaria by the international centers of excellence for malaria research Acta Tropica. ,vol. 121, pp. 324- 332 ,(2012) , 10.1016/J.ACTATROPICA.2011.12.002
Sarah K. Volkman, Daniel E. Neafsey, Stephen F. Schaffner, Daniel J. Park, Dyann F. Wirth, Harnessing genomics and genome biology to understand malaria biology Nature Reviews Genetics. ,vol. 13, pp. 315- 328 ,(2012) , 10.1038/NRG3187
Naomi W. Lucchi, Allison Demas, Jothikumar Narayanan, Deborah Sumari, Abdunoor Kabanywanyi, S. Patrick Kachur, John W. Barnwell, Venkatachalam Udhayakumar, Real-time fluorescence loop mediated isothermal amplification for the diagnosis of malaria. PLOS ONE. ,vol. 5, pp. 13733- ,(2010) , 10.1371/JOURNAL.PONE.0013733
Maja Kodani, Genyan Yang, Laura M. Conklin, Tatiana C. Travis, Cynthia G. Whitney, Larry J. Anderson, Stephanie J. Schrag, Thomas H. Taylor, Bernard W. Beall, Robert F. Breiman, Daniel R. Feikin, M. Kariuki Njenga, Leonard W. Mayer, M. Steven Oberste, Maria Lucia C. Tondella, Jonas M. Winchell, Stephen L. Lindstrom, Dean D. Erdman, Barry S. Fields, Application of TaqMan Low-Density Arrays for Simultaneous Detection of Multiple Respiratory Pathogens Journal of Clinical Microbiology. ,vol. 49, pp. 2175- 2182 ,(2011) , 10.1128/JCM.02270-10
Dionicia Gamboa, Mei-Fong Ho, Jorge Bendezu, Katherine Torres, Peter L. Chiodini, John W. Barnwell, Sandra Incardona, Mark Perkins, David Bell, James McCarthy, Qin Cheng, A Large Proportion of P. falciparum Isolates in the Amazon Region of Peru Lack pfhrp2 and pfhrp3: Implications for Malaria Rapid Diagnostic Tests PLoS ONE. ,vol. 5, pp. e8091- ,(2010) , 10.1371/JOURNAL.PONE.0008091
Malcolm J. Gardner, Neil Hall, Eula Fung, Owen White, Matthew Berriman, Richard W. Hyman, Jane M. Carlton, Arnab Pain, Karen E. Nelson, Sharen Bowman, Ian T. Paulsen, Keith James, Jonathan A. Eisen, Kim Rutherford, Steven L. Salzberg, Alister Craig, Sue Kyes, Man-Suen Chan, Vishvanath Nene, Shamira J. Shallom, Bernard Suh, Jeremy Peterson, Sam Angiuoli, Mihaela Pertea, Jonathan Allen, Jeremy Selengut, Daniel Haft, Michael W. Mather, Akhil B. Vaidya, David M. A. Martin, Alan H. Fairlamb, Martin J. Fraunholz, David S. Roos, Stuart A. Ralph, Geoffrey I. McFadden, Leda M. Cummings, G. Mani Subramanian, Chris Mungall, J. Craig Venter, Daniel J. Carucci, Stephen L. Hoffman, Chris Newbold, Ronald W. Davis, Claire M. Fraser, Bart Barrell, Genome sequence of the human malaria parasite Plasmodium falciparum Nature. ,vol. 419, pp. 498- 511 ,(2002) , 10.1038/NATURE01097
Laura K. Erdman, Kevin C. Kain, Molecular diagnostic and surveillance tools for global malaria control. Travel Medicine and Infectious Disease. ,vol. 6, pp. 82- 99 ,(2008) , 10.1016/J.TMAID.2007.10.001