Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

作者: Sen Wang , Jiedan Chen , Wenpan Zhang , Yan Hu , Lijing Chang

DOI: 10.1186/S13059-015-0678-1

关键词:

摘要: SNPs are the most abundant polymorphism type, and have been explored in many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton genomes …

参考文章(82)
Kyle R. Pomraning, Kristina M. Smith, Erin L. Bredeweg, Lanelle R. Connolly, Pallavi A. Phatale, Michael Freitag, Library Preparation and Data Analysis Packages for Rapid Genome Sequencing Fungal Secondary Metabolism. ,vol. 944, pp. 1- 22 ,(2012) , 10.1007/978-1-62703-122-6_1
Genetics and genomics of cotton Genetics and genomics of cotton.. ,(2009) , 10.1007/978-0-387-70810-2
Edward L. Lubbers, Peng W. Chee, The Worldwide Gene Pool of G. hirsutum and its Improvement Genetics and Genomics of Cotton. pp. 23- 52 ,(2009) , 10.1007/978-0-387-70810-2_2
Jianzhong Wu, Hiroshi Mizuno, Mika Hayashi-Tsugane, Yukiyo Ito, Yoshino Chiden, Masaki Fujisawa, Satoshi Katagiri, Shoko Saji, Shoji Yoshiki, Wataru Karasawa, Rie Yoshihara, Akiko Hayashi, Harumi Kobayashi, Kazue Ito, Masao Hamada, Masako Okamoto, Maiko Ikeno, Yoko Ichikawa, Yuichi Katayose, Masahiro Yano, Takashi Matsumoto, Takuji Sasaki, Physical maps and recombination frequency of six rice chromosomes. Plant Journal. ,vol. 36, pp. 720- 730 ,(2003) , 10.1046/J.1365-313X.2003.01903.X
Thomas E. Bureau, Stephen I. Wright, Newton Agrawal, Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana Genome Research. ,vol. 13, pp. 1897- 1903 ,(2003) , 10.1101/GR.1281503
Elaine K. Round, Susan K. Flowers, Eric J. Richards, Arabidopsis thaliana Centromere Regions: Genetic Map Positions and Repetitive DNA Structure Genome Research. ,vol. 7, pp. 1045- 1053 ,(1997) , 10.1101/GR.7.11.1045
Kai Wang, Wenpan Zhang, Yujie Cao, Zhongxin Zhang, Dewei Zheng, Baoliang Zhou, Wangzhen Guo, Tianzhen Zhang, Localization of high level of sequence conservation and divergence regions in cotton Theoretical and Applied Genetics. ,vol. 124, pp. 1173- 1182 ,(2012) , 10.1007/S00122-011-1777-3
Kai Wang, Wangzhen Guo, Zaijie Yang, Yan Hu, Wenpan Zhang, Baoliang Zhou, David M. Stelly, Z. Jeffrey Chen, Tianzhen Zhang, Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton Chromosoma. ,vol. 119, pp. 255- 266 ,(2010) , 10.1007/S00412-009-0254-0